# Code Changes  

## PDB Pipeline 

- Change all hardcoded paths to params - in config file
- Update paths in config file 
- Update PYTHONPATH variable in config 
- Need to copy over search dumps 
- Check slack config
- Will need to update database configs on codon

## To submit jobs 

- had to change the queue names in several scripts in the family pipeline repo <https://github.com/Rfam/rfam-family-pipeline/>
- run rfmake with `-local`
- run rfsearch with `-scpu 0`