Code Changes

PDB Pipeline

• Change all hardcoded paths to params - in config file

• Update paths in config file

• Update PYTHONPATH variable in config

• Need to copy over search dumps

• Check slack config

• Will need to update database configs on codon

To submit jobs

• had to change the queue names in several scripts in the family pipeline repo https://github.com/Rfam/rfam-family-pipeline/

• run rfmake with -local

• run rfsearch with -scpu 0